<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>1816-7950</journal-id>
<journal-title><![CDATA[Water SA]]></journal-title>
<abbrev-journal-title><![CDATA[Water SA]]></abbrev-journal-title>
<issn>1816-7950</issn>
<publisher>
<publisher-name><![CDATA[Water Research Commission (WRC)]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S1816-79502012000400001</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[An inter-comparison of model-simulated east-west climate gradients over South Africa]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Jury]]></surname>
<given-names><![CDATA[Mark R]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
<xref ref-type="aff" rid="A02"/>
</contrib>
</contrib-group>
<aff id="A01">
<institution><![CDATA[,University of Zululand  ]]></institution>
<addr-line><![CDATA[KwaDlangezwa ]]></addr-line>
<country>South Africa</country>
</aff>
<aff id="A02">
<institution><![CDATA[,University of Puerto Rico Mayaguez Physics Department ]]></institution>
<addr-line><![CDATA[ PR]]></addr-line>
<country>USA</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>00</month>
<year>2012</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>00</month>
<year>2012</year>
</pub-date>
<volume>38</volume>
<numero>4</numero>
<fpage>467</fpage>
<lpage>478</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.org.za/scielo.php?script=sci_arttext&amp;pid=S1816-79502012000400001&amp;lng=en&amp;nrm=iso&amp;tlng=en"></self-uri><self-uri xlink:href="http://www.scielo.org.za/scielo.php?script=sci_abstract&amp;pid=S1816-79502012000400001&amp;lng=en&amp;nrm=iso&amp;tlng=en"></self-uri><self-uri xlink:href="http://www.scielo.org.za/scielo.php?script=sci_pdf&amp;pid=S1816-79502012000400001&amp;lng=en&amp;nrm=iso&amp;tlng=en"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[This study examines how the east-west gradient of climate over South Africa is represented in terms of mean rainfall, tropospheric humidity and circulation, and surface latent heat flux in the satellite era 1980-2001. Inter-comparisons of NCEP2 reanalysis and GPCP satellite-gauge merged rainfall with coupled general circulation model (GCM) simulations from generic CMIP-3 are made, with a focus on the maize belt 25°-29°S, 25°-30°E. The summer climatology is analysed for the zonal gradient in vertical atmospheric structure and the annual cycle of rainfall. A wet bias is found in most simulations over the eastern mountains, but in two GCMs (CSM3, PCM) it extends over the western plateau. The east-west gradient in vegetation affects the vertical flux of surface moisture into the atmosphere. ECMWF reanalysis and SAFARI-2000 flux tower data reveal that this process is triggered during daytime heating, so model ability to handle the diurnal cycle is crucial. Inter-annual variability is briefly studied and two operational ensemble models (CFS and ECHAM4) simulate and forecast summer rainfall variations with positive correlation to observed values. The AIRS satellite night and day relative humidity structure is contrasted for dry and wet January months. All five generic CMIP-3 models: GFDL2, CSM3, PCM, HADen, ECHAM4 project a drying trend in the maize area over the period 2000-2050, using the SRES A1B scenario. Recommendations for observing the surface and mixed layer moisture fluxes are given.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[east-west climate gradient]]></kwd>
<kwd lng="en"><![CDATA[model simulation and intercomparison]]></kwd>
<kwd lng="en"><![CDATA[South Africa]]></kwd>
</kwd-group>
</article-meta>
</front><body><![CDATA[ <p><font face="Verdana, Arial, Helvetica, sans-serif" size="4"><b><a name="top"></a>An    inter-comparison of model-simulated east-west climate gradients over South Africa</b></font></p>     <p>&nbsp;</p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2"><b>Mark R Jury</b><a href="#back"><sup>*</sup></a></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">University of Zululand,    KwaDlangezwa, 3886, South Africa Physics Department, University of Puerto Rico    Mayaguez, PR, USA 00681</font></p>     <p>&nbsp;</p>     <p>&nbsp;</p> <hr noshade size="1">     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2"><b>ABSTRACT</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">This study examines    how the east-west gradient of climate over South Africa is represented in terms    of mean rainfall, tropospheric humidity and circulation, and surface latent    heat flux in the satellite era 1980-2001. Inter-comparisons of NCEP2 reanalysis    and GPCP satellite-gauge merged rainfall with coupled general circulation model    (GCM) simulations from generic CMIP-3 are made, with a focus on the maize belt    25&deg;-29&deg;S, 25&deg;-30&deg;E. The summer climatology is analysed for the    zonal gradient in vertical atmospheric structure and the annual cycle of rainfall.    A wet bias is found in most simulations over the eastern mountains, but in two    GCMs (CSM3, PCM) it extends over the western plateau. The east-west gradient    in vegetation affects the vertical flux of surface moisture into the atmosphere.    ECMWF reanalysis and SAFARI-2000 flux tower data reveal that this process is    triggered during daytime heating, so model ability to handle the diurnal cycle    is crucial. Inter-annual variability is briefly studied and two operational    ensemble models (CFS and ECHAM4) simulate and forecast summer rainfall variations    with positive correlation to observed values. The AIRS satellite night and day    relative humidity structure is contrasted for dry and wet January months. All    five generic CMIP-3 models: GFDL2, CSM3, PCM, HADen, ECHAM4 project a drying    trend in the maize area over the period 2000-2050, using the SRES A1B scenario.    Recommendations for observing the surface and mixed layer moisture fluxes are    given.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2"><b>Keywords:</b>    east-west climate gradient, model simulation and intercomparison, South Africa</font></p> <hr noshade size="1">     ]]></body>
<body><![CDATA[<p>&nbsp;</p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>Introduction</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Understanding and    predicting South African climate is challenging because of the sharp east-west    moisture gradient over the subtropical plateau (Hulme et al., 1996). As a food-exporting    nation, South Africa's maize production is highly sensitive to summer (December    to February) rainfall anomalies: varying from an area-averaged 1 to 4 t/ha (Schulze    et al., 1993; Martin et al., 2000). Much of the rainfall comes from tropical-temperate    troughs that induce NW-oriented cloud bands across the eastern Kalahari savanna    (Barclay et al., 1993). The annual rainfall cycle peaks in January as the inter-tropical    convergence zone dips south-eastward. External forcing of South Africa's climate    comes through the Pacific El Nino Southern Oscillation (ENSO) and regional changes    in SE Atlantic / SW Indian Ocean sea surface temperatures (SST) and winds (Mason    and Jury, 1997).</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Coupled general    circulation models (GCM) have shown skill in simulating the distribution and    variability of rainfall and temperature over Southern Africa (Barnston et al.,    2003). The subcontinent creates zones of convergence through orographic friction,    thermally-induced circulations and evapotranspiration (cf. surface fields in    <a href="#f1ab">Fig. 1</a>). Soil moisture and latent heat flux are useful determinants    of the surface water budget and potential for agriculture (Delworth and Manabe,    1989; Poveda et al., 2001; Atlas et al., 1993; Poveda et al., 2005). Southern    Africa is of sufficient scale to be represented in general circulation models    (GCMs) of 2&deg; resolution, for land-surface feedbacks with atmospheric convection    to be evaluated. Furthermore, climatologies over South Africa's maize belt will    benefit from a well-maintained and dense observing system (<a href="#f1ab">Fig.    1b</a>).</font></p>     <p>&nbsp;</p>     <p><a name="f1ab"></a></p>     <p align="center"><img src="/img/revistas/wsa/v38n4/01f01ab.jpg">    <br>   <a name="f1cd"></a> <img src="/img/revistas/wsa/v38n4/01f01cd.jpg"></p>     <p>&nbsp;</p>     ]]></body>
<body><![CDATA[<p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Model-simulated    rainfall distributions are related to pathways between moisture sources and    sinks over oceans and continents (Misra et al., 2002). While moisture is sourced    from warm seas, lifting mechanisms are more vigorous in mountain locations during    summer heating. Typically, mean rainfall declines westward across subtropical    continents, but a poor representation of this gradient over South Africa may    arise through the way interactions are handled between the warm humid air mass    off the east coast, mid-tropospheric subsidence, the seasonally-alternating    zonal circulation and surface fluxes. Research is needed to assess model ability    to simulate rainfall and other climatic variables over South Africa's maize    belt by inter-comparison with satellite-gauge merged products and observation-based    reanalyses. Prospects for improved long-range forecasts partially depend on    how well the earth system feedbacks are represented, and the ability of monitoring    and modelling tools to quantify the initial state and external forcing.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Here the ability    of GCMs to simulate and predict the South African summer circulation and east-west    moisture gradient is assessed. The main focus is on representation of the climatology    rather than forecasts or projections. Comparative work can be found in Tadross    et al. (2005), Christensen et al. (2007), and Engelbrecht (2009). Answers are    sought to the following questions: How well do GCMs simulate the zonal overturning    circulation that is critical for summer water balance? How do satellite-gauge    merged and reanalysis estimates of mean rainfall compare with GCMs? Are GCM    rainfall biases related to tropospheric circulations, surface fluxes, or systematic    model errors? What is the amplitude of diurnal and synoptic forcing in dry and    wet summers? And, how can this information be used to plan field campaigns and    improve operational climate predictions for South Africa? The paper's structure    includes an account of 2 verification and 6 model products; followed by results    divided into: summer climatology, annual rainfall cycle, surface fluxes, past    inter-annual variability and projected climate trends; and, finally, conclusions.</font></p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>Verification    and modelling products</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">This section provides    a brief description of each product, most of which are drawn from the IRI climate    library website (<a href="http://iridl.ldeo.columbia.edu/" target="_blank">http://iridl.ldeo.columbia.edu/</a>    .. .with the GCM data using the extension... SOURCES/.WCRP/.CMIP3/). The domain    considered is 15&deg;-35&deg;S, 14&deg;-35&deg;E, with a focus on the band 25&deg;-29&deg;S,    between 25&deg;-30&deg;E (<a href="#f1cd">Fig. 1a</a>); the maize belt of South    Africa, which extends from Bloemfontein and Gaborone in the west, to Pretoria    and Pietermaritzburg in the east. The time period selected to produce climatologies    is January 1980 to December 2001, and coincides with the satellite era when    version2 National Center for Environmental Prediction (NCEP) reanalysis begins    and the third Coupled Model Intercomparison Project (CMIP-3) historical runs    end. All data employed in this analysis are monthly gridded averages. The surface    (non-rainfall) fields include Moderate Imaging Spectrometer (MODIS) satellite    estimated surface temperature <i>(Ts)</i> and vegetation fraction (normalized    difference vegetation index, NDVI), and Climate Prediction Center (CPC) soil    moisture reanalysis (Fan and Van den Dool, 2004). The surface latent heat flux    <i>(Qe)</i> is a model output that quantifies the rate of surface water vaporisation    and vertical transport by turbulent mixing. The simplest approach is to estimate    <i>Qe</i> from a bulk formulae which depends on wind speed and the vertical    gradient of specific humidity at the surface. Over land, vegetation transmits    vapour into the lower atmosphere by transpiration. Attention is given to this    process by analysis of diurnal changes in European Community Medium-range Weather    Forecasts (ECMWF; Uppala et al., 2005) latent heat fluxes and roughness length    and comparison with Variable Infiltration Capacity (VIC) model surface fluxes    (Sheffield et al. 2006). Direct measurements of surface latent heat flux were    obtained from flux towers in the central savanna as part of the SAFARI-2000    Kalahari transect (Scanlon and Albertson, 2004; Lloyd et al., 2004). <i>Qe</i>    fluxes were measured by fast response vertical gust and specific humidity covariance    <i>(w'q'</i>) sensors every 30 min during February-March 2000. This site (Maun,    Botswana) has a vegetation fraction consistent with South Africa's maize belt.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Seasonal area-averaged    rainfall is estimated by merged gauge and satellite radiance data (Huffman et    al., 2007), and by model physics and dynamics in NCEP2 reanalysis. The satellite-gauge    merged product uses 3-hourly geostationary infrared brightness temperatures    to define the duration of 'cold' clouds, then utilises the passive microwave    cloud water emission and the Global Precipitation Climatology Project (GPCP)    local gauge data to generate a monthly precipitation estimate at 1&deg; grid    (Adler et al., 2003). The NCEP2 reanalysis (Kanamitsu et al., 2002) uses the    operational Climate Data Assimilation System in a physics/dynamics-based numerical    weather prediction model (MRF) with a resolution of ~ 200 km. The database includes    surface station, radiosonde, aircraft and satellite sources. Rainfall is model-calculated    in the Arakawa-Schubert convective parameterisation scheme that depends on water    vapour flux convergence, among other factors. Satellite-derived vegetation colour    maps (NDVI), Atmospheric Infra-red Sounding (AIRS) night and day-time relative    humidity vertical sections (from disc.sci.gsfc.nasa.gov/giovanni), and NCEP    wind anomalies are studied for contrasts between dry and wet January months,    when climatic conditions are most critical for maize growth (Jury et al., 1997a).    Synoptic weather effects are described using hovmoller plots of smoothed daily    MODIS Ts, GPCP rainfall and NCEP 925-700 mb zonal wind combined with 700-500    mb vertical motion averaged over 25-29&deg;S for the 15-34&deg;E longitudes    in the October-April months of 2002-03 (dry) and 2005-06 (wet).</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">GCM climatologies    available as part of CMIP-3 were computed from historical runs in the period    1980-2001 from: GFDL2.1, PCM, CSM3, HADen, and ECHAM4. In addition, NCEP's operational    coupled climate forecast system (CFS) ensemble runs were analysed for climatic    features of interest. The CMIP-3 models have been comprehensively reviewed in    Meehl et al. (2005), Meehl et al. (2007), and Reichler and Kim (2008). The Geophysical    Fluid Dynamics Lab model (GFDL2) is described by Delworth et al. (2006), Gnanadesian    et al. (2006) and Griffies et al. (2006) and is close to the CMIP-3 ensemble    mean (Meehl et al., 2007). The resolution of its land and atmospheric components    is 2&deg; </font><font  size="2">&#967;</font><font face="Verdana, Arial, Helvetica, sans-serif" size="2">    2.5&deg;; the atmospheric model has 24 vertical layers; the ocean model resolution    is &lt; 1&deg;, with 50 vertical layers (MOMv3). Version 2.1 of the GFDL model    has improved representation of clouds and land surface forcing. The National    Center for Atmospheric Research Parallel Climate Model (PCM) is described by    Washington et al., (2000). It has a spatial resolution of 2.8 degrees, 26 vertical    levels in the troposphere, and shallow convection is parameterized according    to Hack (1994). The boundary layer is modelled according to Holtslag and Boville    (1993) and considers the soil physics and vegetation. The ocean model has a    grid &lt; 1&deg;, with 40 vertical levels and its dynamics are based on Large    et al. (1994). The Community Climate System Model (here CSM3) of NCAR has ~120    km resolution (Collins et al., 2006; Chang et al., 2007). Deser et al. (2006)    point out that the CSM3 has regional biases that affect rainfall, mainly through    the strength of the subtropical anticyclones and continental monsoons. The CSM3    has improved cloud processes, aerosol radiative forcing, land-atmosphere fluxes    and ocean-mixed layer processes that produce stable simulations. The Hadley    GEM1 ensemble model (here: HADen) is described by Johns et al. (2006) and Martin    et al. (2006) and has a 1.25&deg; latitude x 1.87&deg; longitude resolution    with 38 vertical layers. It is non-hydrostatic, clouds and convection are parameterised,    and the boundary layer scheme is from Lock (2000). The vegetation is static    and the ocean model is derived from Gordon et al. (2000). The hydrology scheme    is based on Cox et al. (1999). The ECHAM4 GCM is based on the ECMWF atmospheric    model and parameterisation schemes developed at Max Planck Institute for Meteorology    which allows the model to be used for coupled climate simulations. The INGV    version is a spectral transform model with 19 atmospheric layers and spatial    resolution of about 2.8&deg; latitude and longitude. A summary of developments    regarding ECHAM4 model physics is given in Roeckner et al. (1996). The initial    SST is from NOAA; terrain heights are extracted at high resolution. The vegetation    fraction is based on the Wilson and Henderson-Sellers (1985) data, and the model    is said to handle the diurnal cycle and mountain-drag. The ECHAM4 ocean model    is updated from Oberhuber (1993). The Climate Forecast System (CFS) is a coupled    dynamical seasonal prediction system operational at NCEP (Saha et al., 2006)    that is not part of CMIP-3. The atmospheric component of the CFS is a ~180 km    resolution version of the Global Forecast System used for daily numerical weather    prediction.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">The ocean component    is the GFDL MOMv3. A set of coupled retrospective ensemble forecasts is made    at different lead times back to 1981 using assimilated observations as in reanalysis.    Here the shortest lead time of 15 days is used to simulate climatological rainfall,    whilst 3-month lead times are evaluated for inter-annual forecasts. The CMIP-3    models used in the climatology and trend analyses are listed in <a href="#t1">Table    1</a>. As a separate study of inter-annual variability, rainfall simulations    and forecasts from operational ensemble versions of a similar group of GCM were    analysed from the IRI climate library website, with extension: /SOURCES/.IRI/.FD/.    These are initialised using operational boundary conditions and persisted SST,    as distinct from the long-term runs of CMIP-3. The operational models used to    evaluate seasonal forecasts (cf. <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4ef">Figs.    4e</a>, <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4ef">f</a>) are listed    in <a href="#t2">Table 2</a>.</font></p>     <p><a name="t1"></a></p>     <p>&nbsp;</p>     ]]></body>
<body><![CDATA[<p align="center"><img src="/img/revistas/wsa/v38n4/01t01.jpg"></p>     <p>&nbsp;</p>     <p><a name="t2"></a></p>     <p>&nbsp;</p>     <p align="center"><img src="/img/revistas/wsa/v38n4/01t02.jpg"></p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>Data analysis</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Rainfall fields    for NCEP2, GPCP, and 6 GCMs were evaluated for the mean annual cycle over the    25&deg;-29&deg;S latitude of South Africa, and plotted as a longitude-time hovmoller    from 1 July, to emphasize the east-west gradient and summer maximum. January    mean NCEP2 zonal winds, vertical motion and relative humidity for the 25&deg;-29&deg;S    latitude were analysed as a vertical section across the longitudes 15&deg;-34&deg;E    from 1000-300 mb overlying a topographic profile that reaches 800 mb. The circulation    data are combined into zonal wind and vertical motion (UW) vectors with W exaggerated    100fold. For comparative purposes, the graphics use consistent scaling. To study    surface feedbacks, latent heat fluxes were intercompared. Model performance    was evaluated for specific features: amplitude and displacement of the annual    cycle of rainfall, the east-west gradient and depth of relative humidity, the    zonal overturning circulation (lower easterlies lifted to join upper westerlies),    and the east-west gradient of surface latent heat flux. To reduce the influence    of product resolution on the outcome, all fields were re-gridded to 100 km resolution    and graphical smoothing was applied. Inter-annual variability was assessed by    extracting December to February rainfall departures in the maize area over the    1980-2007 period, in both simulation (0-lead) and forecast mode (3-month lead).    Cross-correlations were computed between the GCM and observed time series; with    <i>N</i> = 28 the 90% confidence limit is reached when <i>r</i> &gt; 0.30. To    study climate change, GCM projections of annual soil moisture in the maize area    were extracted from the CMIP-3 database for the period 2001-2050 using the A1B    global emissions scenario (Nakicenovic and Swart, 2000) and compared with a    circulation index calculated from standardised departures of the 850 mb easterly    wind and 600 mb vertical motion. A linear trend was fitted to the multi-model    mean and its statistical significance was evaluated.</font></p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>Results</b></font></p>     ]]></body>
<body><![CDATA[<p><font face="Verdana, Arial, Helvetica, sans-serif" size="2"><b>Vertical section    and annual cycle simulation</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">The ability of    models to simulate the January mean structure of relative humidity and the tropospheric    circulation along an east-west cross-section is evaluated in <a href="/img/revistas/wsa/v38n4/01f02.jpg">Fig.    2</a>, together with the mean annual cycle of rainfall. Considering the results    model-by-model, starting with NCEP2, it is found that a strong gradient exists    in atmospheric moisture. Relative humidity is &gt; 75% east of 30&deg;E below    850 mb. In the maize area the January value is 63% and a steady gradient of    5% per 100 km occurs, such that west of 23&deg;E the 850 mb relative humidity    (RH) is &lt; 40%. This structure extends upward to 600 mb, so the isolines over    the central plateau are rather vertical. The top of the moist layer, where RH    &gt; 50%, is ~ 600 mb in the maize area. The tropospheric circulation reveals    weak inflow toward the eastern mountains, but little zonal flow below 800 mb    over the central plateau. Upper westerlies strengthen above 600 mb in January.    The annual cycle of rainfall in NCEP2 hindcast reaches a maximum of 4.6 mm/day    over the eastern mountains in January, with a westward extension of 2 mm/day    to 25&deg;E. Over the maize area the rainfall is 3.4 mm/day with an east-west    gradient of ~ 0.5 mm/day per 100 km. The NCEP2 patterns serve as a reference    for GCM-simulated structure.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">The CSM3 structure    departs from NCEP2 wherein the east-west gradient of relative humidity and rainfall    are poorly represented: the Kalahari is too wet in late summer. The iso-lines    of RH slant over the Kalahari rather than being vertical, and uplift extends    too far west in the 500 mb layer in the CSM3 January climatology. In comparison,    the GFDL2 simulation has a more realistic vertical structure for RH, but is    too wet over the maize area, RH at 850 mb is 79% compared with 63% with that    of NCEP2, and January mean rainfall is 6.1 mm/day: about 1.8 times NCEP2. The    tropospheric circulation in the GFDL2 simulation reveals that low level easterlies    are deep and extend too far west over the Kalahari. Hence the rainfall spreads    westward in the annual cycle: 4 mm/day reaches 21&deg;E. The ECHAM4 simulation    has good RH structure in comparison with NCEP2, although the moist layer (RH&gt;50%)    is too deep over the maize area. The tropospheric circulation is well represented,    but uplift over the eastern mountains is too strong and as a result, rainfall    there (30&deg;E) reaches 7.5 mm/day, 2.2 times the NCEP2 value. Like the GFDL2    climatology, ECHAM4 rainfall spreads too far west over the Kalahari: &gt; 4    mm/day at 22&deg;E. The HADen simulation of RH structure is quite close to NCEP2    in terms of vertical isolines and moist layer height, but, like ECHAM4, uplift    is too strong over the eastern mountains and consequently January rain rates    exceed 8 mm/day at 30&deg;E, the highest of all GCM considered here. At least    the Kalahari is drier, with summer rainfall &lt; 3 mm/day in the HADen simulation.    The PCM model shares similar problems with CSM3 in the low-level easterlies    simulated too far west; so the annual cycle of rainfall peaks in February in    the Kalahari (20&deg;E). The CSM3 RH structure has isolines slanting downward    to the west rather than vertical, but the moist layer is relatively shallow    and rain rates over the maize area are close to NCEP2. The deficiency is in    the zonal overturning circulation being located too far west in the PCM simulation.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2"><b>Annual cycle    climatology and surface fluxes</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Rainfall climatology    observed by GPCP (<a href="/img/revistas/wsa/v38n4/html/01f03.htm">Fig. 3a</a>)    is close to NCEP2, the maximum &gt; 4 mm/day spreads across the eastern mountains    and the east-west gradient is 0.5 mm/day per 100 km. The maize area receives    3.4 mm/day in agreement with NCEP2. The main difference is that GPCP observations    indicate a westward spread of rainfall from early to late summer more than NCEP2,    such that the 2 mm/day isoline reaches 23&deg;E in February. The GPCP summer    rainfall gradient over the Kalahari is even, whereas the NCEP2 gradient is tighter    (weaker) east (west) of 25&deg;E. The CFS rainfall simulation (<a href="/img/revistas/wsa/v38n4/html/01f03.htm">Fig.    3b</a>) is too wet over the eastern mountains, peaks too early (November instead    of January) and the east-west gradient is too strong in the maize belt. CMIP-3    GCM rainfall generally peaks too early: December instead of January.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Considering the    surface feedbacks, <a href="/img/revistas/wsa/v38n4/html/01f03.htm#f3cd">Fig.    3c</a> illustrates the annual cycle climatology for CPC soil moisture. The maximum    is reached in late summer (February-March) over the eastern mountains following    orographic rains. The east-west gradient of soil moisture is 14 to 8 mm across    the maize area. Marked east-west gradients in boundary layer height are evident    in <a href="/img/revistas/wsa/v38n4/html/01f03.htm#f3cd">Fig. 3d</a>. The CFS    model climatology simulates a large annual cycle for mixed layer height, with    a maximum of 1 600 m over the Kalahari (20&deg;-25&deg;E) in early summer (November-December)    prior to heaviest rains.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Intercomparison    of surface latent heat flux may determine why some models better simulate the    east-west gradient of rainfall over South Africa. This element is often model-derived;    direct observations are rare. The NCEP2 January mean fluxes (<a href="/img/revistas/wsa/v38n4/html/01f04.htm">Fig.    4a</a>) go from 35 W/m<sup>2</sup> in the west to about 100 W/m<sup>2</sup>    over the eastern mountains. The ECMWF fluxes have a similar structure, but are    slightly lower across South Africa except in the eastern mountains 29&deg;-30&deg;E.    The GFDL and ECHAM4 simulated January mean latent heat fluxes are closest to    reanalysis in terms of slope and value: ~ 10 W/m<sup>2</sup> high in the maize    area. The CFS and HADen models also replicate the slope, but values are &gt;    20 W/m<sup>2</sup> above reanalysis in the maize area. Both CSM3 and PCM simulated    January mean latent heat fluxes have little slope, being &gt; 50 W/m<sup>2</sup>    too high in the west and too low in the east. This may contribute to the aforementioned    wet bias over the Kalahari.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Analysing factors    governing the east-west climate gradient, the diurnal amplitude of surface moisture    fluxes is seen to be important. Daytime ECMWF surface latent heat fluxes increase    steeply toward the east (<a href="/img/revistas/wsa/v38n4/html/01f04.htm">Fig.    4b</a>), while night time fluxes are near zero and exhibit little east-west    gradient (flat slope). The January mean VIC model evapotranspiration (W/m<sup>2</sup>    ) lies between the two profiles and follows the near-linear upward slope of    satellite-derived vegetation (NDVI) from 0.06 at 15&deg;E to 0.67 at 32&deg;E.    The ECMWF model surface roughness quantifies the frictional drag of topographic    undulations and vegetation cover. Roughness is a constant 0.1 m over the Kalahari    and rises to 1.2 m across the eastern mountains. Direct measurements from Maun,    Botswana are given in <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4cd">Fig.    4c</a> and <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4cd">Fig. 4d</a>    for latent heat flux covariance during February- March 2000. <i>Qe</i> varies    from 0 at night to &gt; 300 W/m<sup>2</sup> in the daytime. Its mean diurnal    cycle reaches 200 W/m<sup>2</sup> at solar noon, a value consistent with ECMWF    fluxes in Kalahari longitudes (20&deg;-25&deg;E). Cross-correlation of 70 meteorological    parameters with measured <i>Qe</i> reveals strong control by solar radiation    (r = 94%, <i>N</i> = 2 880) and consequently surface temperature, but no immediate    association with rainfall. Chikoore and Jury (2010) demonstrate a multi-week    delay between a rain event, greening of vegetation and subsequent infusion of    moisture to the atmospheric mixed layer. Area-averaged NCEP2 flux estimates    at the Maun site are &gt; 60 W/m<sup>2</sup> too high (<a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4cd">Fig.    4d</a>), mainly during night and morning hours. Extrapolating this short set    of direct observations to places with similar vegetation (~ 0.6) and soil moisture    such as the maize belt (cf. <a href="#f1cd">Figs. 1d</a>, <a href="/img/revistas/wsa/v38n4/html/01f03.htm#f3cd">3c</a>)    suggests that modelled fluxes are reasonable. Further model improvements such    as dynamic vegetation in CMIP-5 (Taylor et al., 2011) should better constrain    the associated feedbacks.</font></p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>Representation    of climate variability and trends</b></font></p>     ]]></body>
<body><![CDATA[<p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Intercomparisons    of operational ensemble model simulated and forecast time series of DJF rainfall    over the maize area from 1980 to 2007 are given in <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4ef">Figs.    4e</a> and <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4ef">4f</a> and    cross-correlations are listed in <a href="#t2">Table 2</a>. While simulation    data sets are readily available, ensemble forecast products (initialised with    operational boundary conditions and persisted SST) are more limited. This set    of model runs, available through the IRI forecast division website, must be    seen as distinct from generic CMIP-3 simulations that are unrelated to observed    conditions. The cross-correlations indicate that many operational models fail    to adequately capture the inter-annual rainfall variability over South Africa's    maize area. Only the operational ECHAM4 and CFS ensemble model outputs have    positive but weak correlation &gt; 10% with GPCP rainfall, and only the operational    GFDL has a positive significant correlation with NCEP2 reanalysis. The two verification    products, NCEP2 and GPCP, show good agreement (<a href="#t2">Table 2</a>). At    3-month lead time the operational CFS and ECHAM4 model summer rainfall cross-correlations    with GPCP rainfall are positive but weak. The 1980-2007 time series (<a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4ef">Figs.    4e</a>, <a href="/img/revistas/wsa/v38n4/html/01f04.htm#f4ef">4f</a>) reveal    that both operational models are too wet in 1984-1986 and too dry in 2000 and    2006 summer seasons. Comparison with the more detailed results of Landman and    Beraki (2010) indicate similar levels of performance.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">To investigate    the diurnal cycle and local feedback between the surface and lower troposphere,    AIRS satellite RH profiles are contrasted for a dry (January 2003) and wet (January    2006) summer month. MODIS NDVI and 700 mb wind anomalies (<a href="/img/revistas/wsa/v38n4/html/01f05.htm">Fig.    5a</a>) indicate the 2003 summer was dominated by subsident westerlies. Green    vegetation cover (&gt; 0.6) was sparse and confined east of 28&deg;E. In vertical    section, RH &gt; 40% extended to 550 mb and was not in contact with the surface    over the Kalahari (<a href="/img/revistas/wsa/v38n4/html/01f05.htm#f5b">Figs.    5b</a>, <a href="/img/revistas/wsa/v38n4/html/01f05.htm#f5c">5c</a>). By contrast,    green vegetation extended to 25&deg;E in 2006, even in the Limpopo Valley around    23&deg;S. Easterly wind anomalies exhibited a rising component over the eastern    mountains, and the layer with RH &gt; 40% reached 500 mb. At 700 mb RH exceeded    70% over the Kalahari (20&deg;-25&deg;E). The moist layer in 2006 sloped according    to the underlying surface: upward to the east, while the 2003 structure was    tilted up to the west and ~ 20% drier. The moist layer was shallow in 2003 and    remained near the eastern mountains even during daytime heating. In contrast    the moist layer in 2006 extended 2 km above the eastern mountains, and anomalous    easterly flow provided lift so that rainfall over the maize belt doubled. The    NCEP2 mean latent heat flux over the maize belt in January 2003 was 83 W/m<sup>2</sup>    in contrast to 114 W/m<sup>2</sup> in January 2006.</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Synoptic changes    in winds are driven by the eastward passage of tropical-temperate troughs: in    one phase moisture is pumped westward onto the plateau; in another phase hot    dry Kalahari air spreads eastward. This rhythm is studied using 8-day MODIS    day-time land surface temperatures, and smoothed daily NCEP 700 mb winds and    GPCP rainfall plotted as hovmollers for the two contrasting summers. Land surface    temperatures &gt; 45&deg;C spread across central South Africa in 2002-03, but    were confined to the desert zone west of 23&deg;E in 2005-06 (<a href="/img/revistas/wsa/v38n4/html/01f06.htm">Fig    6a</a>). The maize belt in January showed significant contrasts in 2002-03:    hot spells continued under the influence of subsident westerly winds and infrequent    rainfall &gt; 4 mm/day (<a href="/img/revistas/wsa/v38n4/html/01f06.htm#f6b">Fig.    6b</a>). In 2005-06 hot spells diminished after December, and cool conditions    prevailed with weak easterlies and rising motion. Numerous rain events in excess    of 12 mm/day spread across the Kalahari (20&deg;-25&deg;E) in early 2006. The    synoptic rhythm was more rapid in 2005-06 (12 events), but slower in 2002-03    (9 events).</font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Predicted long-term    trends are briefly examined to determine the extent of model consensus. Projected    time series from the various CMIP-3 GCM simulations are illustrated in <a href="/img/revistas/wsa/v38n4/01f07.jpg">Figs.    7a</a> and <a href="/img/revistas/wsa/v38n4/01f07.jpg">7b</a> for soil moisture    and the zonal overturning circulation. These are based on the A1B scenario up    to 2050, and intercomparisons are made using standardised departures (value-mean/standard    deviation). Soil moisture shows a significant and steady decline in all 6 models    of ~ 1 </font><font  size="2">&#963;</font><font face="Verdana, Arial, Helvetica, sans-serif" size="2">.    The linear trend fit is 63% for the multi-model mean. The CMIP-3 models exhibit    out-of-phase inter-annual variability, as expected in such a generic simulation.    The projected decline in soil moisture owes more to increased evaporation than    reduced precipitation, according to a breakdown of components. A similar outcome    is found by Muller (2009) wherein a projected decline in crop-yield over southern    Africa is related to CMIP-3 model-simulated moisture deficits. The zonal overturning    circulation index (comprised of December-February -U850+W600 averaged over the    maize belt) has a declining trend, but large inter-annual and inter-model variability    is found. The linear trend fit for the CMIP-3 multi-model mean is 18% (<a href="/img/revistas/wsa/v38n4/01f07.jpg">Fig.    7b</a>). The low-level easterly inflow and uplift may diminish, but not at the    rate of soil moisture. Thus the predicted desiccation of South Africa's maize    belt may derive from local surface and mixed-layer forcing, and not necessarily    from changes in the regional circulation.</font></p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>Conclusions</b></font></p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">This study has    compared reanalysis and model products for their ability to represent the east-west    gradient of climate over South Africa in the satellite era, with a focus on    key features: RH and zonal circulation structure, the annual cycle of rainfall,    and latent heat fluxes. All of the CMIP-3 GCM considered have a wet bias over    the eastern mountains that extends westward across the maize area, but in 2    cases (CSM3, PCM) high rainfall is erroneously simulated over the Kalahari.    The moist layer depth is affected by:</font></p> <ul>       <li><font face="Verdana, Arial, Helvetica, sans-serif" size="2">How much humid      SW Indian Ocean air is drawn from the east</font></li>       <li><font face="Verdana, Arial, Helvetica, sans-serif" size="2">The rate of      evapotranspiration (Qe) over the eastern mountains</font></li>       <li><font face="Verdana, Arial, Helvetica, sans-serif" size="2">The disposition      of vertical uplift in the continent-heated air</font></li>     ]]></body>
<body><![CDATA[</ul>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">These complex interactions    are adequately represented in the CMIP-3 generation of GCM, even though the    vegetation is static. Inter-annual variability was briefly studied and 2 operational    ensemble models (CFS and ECHAM4) forecast the summer rainfall with positive    correlation compared to observed (GPCP). The 5 generic CMIP-3 models evaluated    project a drying trend in the maize area over the period 2000-2050, using the    A1B scenario. This trend is only partially accounted for by changes in the regional    zonal overturning circulation. Hence the desiccation may be driven by local    surface and mixed layer forcing, and increased evaporation from higher surface    temperatures. Representation of the diurnal cycle of evapo-transpiration was    suggested to be important for modelling the east-west gradient in climate (Tadross    et al., 2006). Given these insights, it is recommended that the regional observing    system be enhanced for measurements of surface and mixed layer moisture fluxes,    using an east-west line of flux towers and routine aircraft measurements of    moisture covariance (Jury et al., 1997b) in an intensive field campaign that    could form part of an ongoing effort by the South African Weather Service. Land-use    managers can promote the retention of soil moisture and vegetation cover through    crop mulching, recovering unproductive areas, limiting grazing, etc.; so that    South Africa can continue as a food-exporting nation.</font></p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="3"><b>References</b></font></p>     <!-- ref --><p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">ADLER RF, HUFFMAN    GJ, CHANG A, FERRARO R, XIE PP, JANOWIAK J, RUDOLF B, SCHNEIDER U, CURTIS S,    BOL-VIN D, GRUBER A, SUSSKIND J, ARKIN P and NELKIN E (2003) The Version-2 Global    Precipitation Climatology Project (GPCP) Monthly Precipitation Analysis (1979-Present).    <i>J. 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<body><![CDATA[<p><font face="Verdana, Arial, Helvetica, sans-serif" size="2">Received 11 April    2010; accepted in revised form 27 June 2012.</font></p>     <p>&nbsp;</p>     <p>&nbsp;</p>     <p><font face="Verdana, Arial, Helvetica, sans-serif" size="2"><a name="back"></a><a href="#top">*</a>    To whom all correspondence should be addressed. ffi +1 321 6930674; e-mail:    <a href="mailto:mark.jury@upr.edu">mark.jury@upr.edu</a></font></p>      ]]></body>
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