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Water SA

versão On-line ISSN 1816-7950
versão impressa ISSN 0378-4738

Water SA vol.41 no.2 Pretoria  2015 

A cheap and simple passive sampler using silicone rubber for the analysis of surface water by gas chromatography-time of flight mass spectrometry



Yvette NaudéI, *; Peter Gorst-AllmanII; Egmont RohwerI

IUniversity of Pretoria, Pretoria, South Africa
IILECO Africa, Kempton Park, South Africa




Water pollution events may arise rapidly, requiring a methodology that is easy to implement, fast to deploy, and sufficiently sensitive to detect the trace presence of hazardous contaminants. A cheap and easy to use silicone rubber (polydimethylsiloxane (PDMS)) miniature passive sampler is described. In order to test the methodology, pollutants were concentrated, in situ, from surface water in and around Pretoria, South Africa. The versatile sampler allowed for conventional and enhanced sensitivity, solvent-free analysis by comprehensive gas chromatography - time of flight mass spectrometry (GCxGC-TOFMS) and high resolution TOFMS (GC-HRT). Contaminants detected in surface water include caffeine, personal care products, pharmaceuticals, pesticides and polycyclic aromatic hydrocarbons.

Keywords: passive sampler, silicone rubber (PDMS) tubing, GCxGC-TOFMS, GC-HRT, surface water quality




Water supply in South Africa is characterised by both achievements and challenges. In recent years, the country has made satisfactory progress with regard to improving access to water supply in urban areas. However, in some rural areas, women spend up to one-third of their time fetching water, and many rural dwellers are still without access to safe water sources and are compelled to take untreated water from rivers and dams. As a result of this situation, it is necessary to have a methodology which can be used for fast determination of pollutants, both organic and inorganic, which may possibly contaminate streams and wells. As water quality problems can arise very quickly, and can also be extremely short lived (e.g. spills or short- term releases into rivers), the methodology must be easy to implement, rapid to deploy, and must be sufficiently sensitive to detect the trace presence of harmful contaminants.

Spot water sampling gives chemical information specific to the moment of sampling and may fail to detect intermittent or transitory pollution. In contrast, passive sampling delivers a chemical profile representing days, weeks, or months depending on the duration of sampling. Furthermore, passive samplers accumulate analytes over time and thus provide enhanced sensitivity for trace level analytes compared to conventional bottle collection of water.

Silicone rubber (polydimethylsiloxane (PDMS)) functions as a hydrophobic solvent (Baltussen et al., 2002) and is therefore ideally suited for the in situ enrichment of persistent organic pollutants from water. Passive samplers are solvent extracted prior to instrumental analysis to obtain the trapped contaminants in an easily analysable form. Solvent extraction has the disadvantage that it requires large amounts of often hazardous solvents and only microlitre amounts of the solvent extract are analysed. To address the disadvantages of bulk sample collection followed by solvent extraction, a cheap and easy to use passive sampler made from silicone rubber (PDMS) tubing, previously developed for solvent-free extraction of soil (Naudé et al., 2011; Naudé and Rohwer, 2012), was used. The passive sampler was applied to concentrate pollutants from surface water in and around Pretoria, South Africa. First results are reported.



Sampling sites

Streams were sampled, in situ, at 3 different locations:

Site 1: A small stream (Hartbeesspruit) flowing through the University of Pretoria (UP) recreational area, close to sports grounds, recreational braai (barbecue) areas and student residences (for 3 days)

Site 2: The Moreletaspruit flowing through residential areas (for 3 days)

Site 3: The Rietvleispruit running through the Rietvlei Nature Reserve (5 weeks).

The watercourses run through natural, industrial, and residential areas, and informal settlements. Sampling was performed from October 2013 to February 2014, in the summer, during the rainy season in Pretoria, South Africa.

Miniature passive sampler

A sampling loop was fashioned by taking a 10.5 cm (0.02 g) length of silicone elastomer medical grade tubing (0.64 mm OD x 0.3 mm ID, Sil-Tec Technical Products, Georgia, USA) and joining the ends by inserting a 1 cm piece of fused silica capillary column (250 μm ID) (Fig. 1). A loop arrangement prevents water from entering the PDMS tubing and aids ease of handling. The sorption volume of the loop was 26 μℓ (Naudé, et al. 2011; Naudé and Rohwer, 2012). PDMS loops were inserted into a stainless steel mesh basket (43 mm x 30 mm) (Goldsmith & Jewellery Supplies, Pretoria, South Africa). The sampling device was placed in situ, fully submerged in the watercourses described above.



After sampling, the PDMS loops were blotted with tissue paper and stored in an airtight glass container at 4°C. The isolated analytes were desorbed from the PDMS loop either in the inlet liner of a GC inlet or in a GerstelTM thermal desorber system. Alternatively, the analytes were solvent extracted from the PDMS loop with 1 m n-hexane (Merck, South Africa) followed by ultrasonication for 20 min. One μℓ of the solvent extract was injected (250°C) in the splitless mode (1 min) for analysis.

Thermal desorption with cooled injection

After passive sampling, the PDMS loop was inserted into a 17.8 cm long glass desorption tube (4 mm ID, 6.00 mm OD) from GerstelTM (Chemetrix, Midrand, South Africa) for thermal desorption into a GCxGC-TOFMS. Compounds concentrated onto the PDMS sampler were thermally desorbed by heating the traps in a GerstelTM thermal desorber system (TDS 3) from 30°C (3 min) at 60°C/min to 250°C (10 min) with a desorption flow rate of 100 m/min at a vent pressure of 117 kPa (helium 5.0, Afrox, South Africa). The TDS transfer line temperature was 350°C. The desorbed analytes were cryogenically focused at -50°C using liquid nitrogen (Afrox, South Africa) and a cooled injection system (Gerstel CIS 4) with an empty baffled deactivated glass liner. After desorption, a splitless injection (purge on at 1 min, purge flow 40 m/min, solvent vent mode) was performed by heating the CIS from -50°C at 10°C/s to 250°C and holding it there for the duration of the GC run.

Thermal desorption in a GC inlet

The PDMS loop was inserted into the glass inlet liner (splitless) of a GCxGC-TOFMS or GC-HRT and desorbed at 250°C with a splitless time of 1 min.


Separation of compounds was performed on a LECO Pegasus 4D comprehensive gas chromatograph - time of flight mass spectrometer (GCxGC-TOFMS) including an Agilent 7890 GC (LECO Africa (Pty) Ltd., Kempton Park, South Africa). The system included a secondary oven and a dual stage modulator. Nitrogen gas (nitrogen generator) was used for both the cold jets and the hot jets. The gas for the cold jets was cooled by passing it through a dewar filled with liquid nitrogen. The column set consisted of a 30 m x 0.25 mm ID x 0.25 μm df Rxi 5SilMS (5% phenyl, 95% dimethylpolysiloxane) as the primary column (1D), joined to a 1 m x 0.25 mm ID χ 0.25 μm df Rxi-17Sil MS secondary column (2D) (Restek, Bellefonte, PA, USA). The primary column was connected to the secondary column with a presstight column connector (Restek, Bellefonte, PA, USA). The primary oven temperature programme was 40°C (1 min) at 10°C/min to 320°C (2 min). The GC run time was 31 min. The secondary oven was offset by +10°C from the primary oven. The modulator temperature was offset 15°C from the second oven temperature. The modulation period was 3 s with a hot pulse time of 0.6 s. The carrier gas (helium 5.0, Afrox, South Africa) flow rate was 2 m/min in the constant flow mode. The MS transfer line temperature was set at 300°C. The ion source temperature was 230°C, the electron energy was 70 eV in the electron ionisation mode (EI+), the data acquisition rate was 100 spectra/s, the mass acquisition range was 35-520 Da, and the detector voltage was set at -1 815V. Compounds were tentatively identified based on comparison of mass spectra (match quality >80%) and experimental linear retention indices (RI) to those of the National Institute of Standards and Technology (NIST08) library and literature.


The high-resolution TOFMS system was a Pegasus HRT (LECO Corporation, St Joseph, MI, USA) using Folded Flight Path technology (Verentchikov et al., 2005). The system had an Agilent 7890 GC (Agilent Technologies, Mississauga, ON) equipped with an Agilent 4513A autosampler. The column used was a 30 m x 0.25 mm ID x 0.25 μm df Rxi-5MS (5% phenyl, 95% dimethylpolysiloxane) (Restek, Bellefonte, PA, USA). The oven temperature programme was 35°C (1 min) at 10°C/min to 320°C (2 min). The GC run time was 31.5 min. The carrier gas (helium 5.0, Afrox, South Africa) flow rate was 2 m/min in the constant flow mode. The MS transfer line temperature was set at 300°C. The ion source temperature was 250°C, the electron energy was 70 eV in the electron ionisation mode (EI+), the data acquisition rate was 4 spectra/s, the mass acquisition range was 45-520 Da, and the extraction frequency was 1.8 kHz. Compounds were tentatively identified based on comparison of mass spectra to those of the NIST08 library. Mass accuracy was used to determine elemental composition which provided confirmation of the library search results.



Dissolved compounds in surface water from 3 different sites were concentrated using PDMS loops as a passive sampler, and the results are depicted in Tables 1 to 6. Rather than present the full list of compounds, data representative of different compound classes only are described in this publication. A full list of all the compounds detected is available on request from the authors. Selected compounds detected by GCxGC-TOFMS are reported in Tables 1 to 3, and those detected by GC-HRT are reported in Tables 4 to 6. The compounds described have been chosen to show the versatility of the trapping process for common chemicals found in the environment. In addition, they indicate a difference in the composition of the river water at the different sites.

GCxGC-TOFMS is a particularly effective tool for this type of analysis, due to its superior resolving capability based on both the boiling point and the polarity of compounds. The GCHRT provides excellent mass accuracy (routinely <1 ppm) and this feature can be used to determine elemental composition which provides good confirmation of the library search results.

Distinct profiles are observed for each of the 3 sampling points (Fig. 2). PAHs (polycyclic aromatic hydrocarbons) are commonly found in the South African environment, especially close to informal settlements and recreational areas where open fires for warmth and cooking are common. Two of the rivers also flow close to small industrial areas, and this is indicated by the presence of several industrial chemicals (Fig. 2). Pesticides and herbicides are also found where the rivers are close to agricultural areas (Fig. 2). Personal care products are evident in the water which flows through residential areas and close to student residences and informal settlements. Caffeine, an ingredient in many beverages, food and medicinal products, was detected in water from the Moreletaspruit (Site 2) (Table 5). Since caffeine is excreted in urine, its presence in the aquatic environment serves as an indicator of human pollution (Ferreira, 2005).



Sample introduction into a GC-MSTOF was versatile in that the analytes were removed from the sampler device by either direct desorption in the GC inlet (GC-HRT), or by TDS (GCxGC-TOFMS), or by solvent extraction (GC-HRT). The advantage of thermal desorption, when compared to conventional liquid injection of microlitre amounts of a dilute extract, is enhanced sensitivity as the entire sample mass is transferred to the GC. A disadvantage is that thermal desorption is destructive. However, multiple loops are inserted into replicate stainless steel baskets and thus a sufficient number of loops are available for replicate runs.

In this study, the passive sampler was employed as an inexpensive and simple pollutant screening tool. However, contaminant concentrations may be derived by using performance reference compounds to determine in situ passive sampler sampling rates followed by conversion into water concentration of the analytes by means of silicone rubber specific partition coefficients (Yates et al., 2007; O'Hara, 2009; Booij and Smedes, 2010; Monteyne et al., 2013). The silicone rubber tubing passive sampler as a quantitative device will form part of a follow-up study.

Commercial passive samplers can be expensive (ITRC, 2005). In contrast, the miniature passive sampler was cheap, with the cost of manufacturing per sampler less than ZAR35 (ZAR7 for the sampling loop + ZAR25 for the stainless steel mesh basket). The passive sampler requires a minimum of storage space and can withstand transport over rough terrain which is not always the case for glass sample bottles.



The PDMS passive sampling device was cheap and easy to use. Enhanced sensitivity was achieved by solvent-free sample introduction. Each sampling site exhibited a different chemical profile depending on the source of input. Contaminants detected in surface water included caffeine, personal care products, pharmaceuticals, pesticides and PAHs.



Elna Louw and Riaan Marais, Rietvlei Dam Nature Reserve, Pretoria, South Africa, for kindly granting access to one of the sampling points; Jack Cochran, RESTEK, for generous donation of GC columns and consumables, and the National Research Foundation (NRF) for financial support.



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* To whom all correspondence should be addressed. +27 12 420 2517; e-mail:

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